HhPN

HhPN

HhPN is extended version of basic HP model with inclusion of following physiochemical properties carbon content, disulfide bond, hydrophobicity scale, codon frequency and BLOSUM62 similarity matrix. With which we propose a novel enhanced energy function ‘HhPN.' It takes input in the form of a sequence of 0,1,2,3, highly hydrophobic, partially hydrophobic, polar positive and polar negative respectively. It folds the sequence based on the constituting amino acids propensities towards the secondary structural motif.

Sample Uses:

Input:    0000000000111111111122222222223333333333

Output:    one of the possible conformation over the square and triangular lattice.